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Python script to identify SARS-CoV2 variants, see paper

Jupyter notebooks for the analysis of ESM-Scan tool data from paper

A computational workflow to assign the role of amino acid residues in a protein, using MSA and AI designs

Scripts to generate a Sequence Similarity Network, starting from a curated sequence alignment

GUI Tool for generating data import functions in python (similar to Matlab's "Import Data" GUI)

A generic simulation environment in Python to compare sliding mode discretizations and adaptations using different system models.

The DEM simulation and postprocessing code for the paper "The uncertainty inherent to DEM simulations of interlocking particles" (DOI: 10.1038/s41598-025-90129-6)

Repository for code that is maintained by Stefan Pofahl