diff --git a/ssn.ipynb b/ssn.ipynb index 5bc194192d8e473241e102b8fcc1d968b5160e7f..52ba3a8bd80c248ef80ababdf20498686851f52a 100644 --- a/ssn.ipynb +++ b/ssn.ipynb @@ -1,21 +1,10 @@ { - "nbformat": 4, - "nbformat_minor": 0, - "metadata": { - "colab": { - "provenance": [] - }, - "kernelspec": { - "name": "python3", - "display_name": "Python 3" - }, - "language_info": { - "name": "python" - } - }, "cells": [ { "cell_type": "markdown", + "metadata": { + "id": "AkmFcUlSqjvW" + }, "source": [ "# SSN analysis\n", "\n", @@ -27,13 +16,16 @@ "\n", "Alternatively, a BLAST-preanalysed database can be provided.\n", "Just hit cancel on the first FASTA upload prompt and then provide the TSV file." - ], - "metadata": { - "id": "AkmFcUlSqjvW" - } + ] }, { "cell_type": "code", + "execution_count": null, + "metadata": { + "cellView": "form", + "id": "ad3vrSFIVZNl" + }, + "outputs": [], "source": [ "#@title Click below to run\n", "\n", @@ -69,8 +61,8 @@ " print('No file provided')\n", "\n", "if isfile(fileTsv):\n", - " fileBOut = 'evs.csv'\n", - " fileEOut = 'bts.csv'\n", + " fileBOut = 'bts.csv'\n", + " fileEOut = 'ets.csv'\n", " fileZip = NamedTemporaryFile(suffix='.zip').name\n", "\n", " try:\n", @@ -119,13 +111,21 @@ " files.download(fileZip)\n", " except:\n", " print('Invalid file format')" - ], - "metadata": { - "id": "ad3vrSFIVZNl", - "cellView": "form" - }, - "execution_count": null, - "outputs": [] + ] + } + ], + "metadata": { + "colab": { + "provenance": [] + }, + "kernelspec": { + "display_name": "Python 3", + "name": "python3" + }, + "language_info": { + "name": "python" } - ] -} \ No newline at end of file + }, + "nbformat": 4, + "nbformat_minor": 0 +}